science & techThe Conversation

Coffee crops are dying from a fungus with species-jumping genes – researchers are ‘resurrecting’ their genomes to understand how and why

the gist

Coffee wilt disease, caused by the fungus Fusarium xylarioides, blocks the water-carrying tissue of coffee plants until they die. First identified in 1927, it has repeatedly reshaped the coffee supply in Africa: robusta varieties that were thought resistant fell to it in the 1970s, and the disease spread through eastern and central Africa, cutting yields so sharply that Uganda's production did not recover until 2020. Outbreaks since the 1990s have cost over US$1 billion. Researchers are now reconstructing historical strains from preserved fungal culture collections and sequencing their genomes. They found that parts of the fungus's genome, including large mobile DNA elements called Starships, appear to have been acquired from a different fungus, F. oxysporum, which infects more than 120 crops. Those borrowed genes may help explain how the pathogen switched between arabica and robusta hosts.

so what

Coffee is one of the world's most traded crops, and understanding how pathogens jump between species and hosts is key to preventing future outbreaks. The study also shows that disease threats can be reconstructed from old samples, a useful tool for farmers and scientists alike.

Illustrative photo · The Mediae Company, CC BY-SA 4.0, via Wikimedia Commons